Package: btrbk Version: 0.31.3-1~nd21.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 405 Depends: neurodebian-popularity-contest, perl, btrfs-progs (>= 4.12) Recommends: openssh-client, mbuffer Suggests: openssl, python3 Homepage: https://digint.ch/btrbk/ Priority: optional Section: utils Filename: pool/main/b/btrbk/btrbk_0.31.3-1~nd21.04+1_all.deb Size: 110892 SHA256: 55d6e8cebc1c3068c6c3122cba4b1c1b83534e92d79d3df733c940d9eae025c0 SHA1: 93baf5e280e4fe47e3d66bfc1e3401b487d51cb0 MD5sum: e728465d8db7def6d3f6e313fef24881 Description: backup tool for btrfs subvolumes Backup tool for btrfs subvolumes, using a configuration file, allows creation of backups from multiple sources to multiple destinations, with ssh and flexible retention policy support (hourly, daily, weekly, monthly). Package: datalad Version: 0.15.0-2~nd21.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 191 Depends: neurodebian-popularity-contest, python3-datalad (= 0.15.0-2~nd21.04+1), python3-argcomplete, python3:any Suggests: datalad-container, datalad-crawler, datalad-neuroimaging Homepage: https://datalad.org Priority: optional Section: science Filename: pool/main/d/datalad/datalad_0.15.0-2~nd21.04+1_all.deb Size: 154928 SHA256: 96bd1bc65684a84bbeb4ed90bedb1cf7c955de68963dbd7416446e85a63e5b31 SHA1: 6ee560ad9d1ea54ef239ee021d0a3d175ab19db3 MD5sum: e0fcce607904de8292de00cdc8636411 Description: data files management and distribution platform DataLad is a data management and distribution platform providing access to a wide range of data resources already available online. Using git-annex as its backend for data logistics it provides following facilities built-in or available through additional extensions . - command line and Python interfaces for manipulation of collections of datasets (install, uninstall, update, publish, save, etc.) and separate files/directories (add, get) - extract, aggregate, and search through various sources of metadata (xmp, EXIF, etc; install datalad-neuroimaging for DICOM, BIDS, NIfTI support) - crawl web sites to automatically prepare and update git-annex repositories with content from online websites, S3, etc (install datalad-crawler) Package: dcm2niix Version: 1:1.0.20211006-1~nd21.04+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 900 Depends: neurodebian-popularity-contest, libc6 (>= 2.33), libgcc-s1 (>= 3.3.1), libopenjp2-7 (>= 2.0.0), libstdc++6 (>= 9), libyaml-cpp0.6 (>= 0.6.2) Homepage: https://github.com/rordenlab/dcm2niix Priority: optional Section: science Filename: pool/main/d/dcm2niix/dcm2niix_1.0.20211006-1~nd21.04+1_amd64.deb Size: 230320 SHA256: c9b26cc1a519c0bfb2139d31bee1209227ccef34492132c0728ca1dc0de65a91 SHA1: 9e09caa2725a7d89d5fab83487d5eaf3649779e5 MD5sum: 4892990980bd62a7d9158303bee4f631 Description: converts DICOM and PAR/REC files into the NIfTI format This is the successor of the well-known dcm2nii program. it aims to provide same functionality albeit with much faster operation. This is a new tool that is not yet well tested, and does not handle ancient proprietary formats. Use with care. Package: git-annex-standalone Source: git-annex Version: 8.20210903-1~ndall+1 Architecture: amd64 Maintainer: Richard Hartmann Installed-Size: 153581 Depends: git, netbase, openssh-client Recommends: lsof, gnupg, bind9-host, youtube-dl, git-remote-gcrypt (>= 0.20130908-6), nocache, aria2 Suggests: xdot, bup, adb, tor, magic-wormhole, tahoe-lafs, libnss-mdns, uftp Conflicts: git-annex Breaks: datalad (<= 0.12.3~) Provides: git-annex Homepage: http://git-annex.branchable.com/ Priority: optional Section: utils Filename: pool/main/g/git-annex/git-annex-standalone_8.20210903-1~ndall+1_amd64.deb Size: 49906800 SHA256: 719e574aa5d5537a30d05cdb68f1b5ceaab06de3de00b470822e37b0a86d0987 SHA1: 3fd5aa7f9d0a83a9f8d00e562e1fc1638d9e8e8b MD5sum: f63b5b8dbcd18d923bd7df4d11602d96 Description: manage files with git, without checking their contents into git -- standalone build git-annex allows managing files with git, without checking the file contents into git. While that may seem paradoxical, it is useful when dealing with files larger than git can currently easily handle, whether due to limitations in memory, time, or disk space. . It can store large files in many places, from local hard drives, to a large number of cloud storage services, including S3, WebDAV, and rsync, with a dozen cloud storage providers usable via plugins. Files can be stored encrypted with gpg, so that the cloud storage provider cannot see your data. git-annex keeps track of where each file is stored, so it knows how many copies are available, and has many facilities to ensure your data is preserved. . git-annex can also be used to keep a folder in sync between computers, noticing when files are changed, and automatically committing them to git and transferring them to other computers. The git-annex webapp makes it easy to set up and use git-annex this way. . This package provides a standalone bundle build of git-annex, which should be installable on any more or less recent Debian or Ubuntu release. Package: mrtrix3 Version: 3.0.3-1~nd21.04+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 41350 Depends: neurodebian-popularity-contest, libc6 (>= 2.33), libfftw3-double3 (>= 3.3.5), libgcc-s1 (>= 4.0), libgl1, libgomp1 (>= 4.9), libpng16-16 (>= 1.6.2-1), libqt5core5a (>= 5.15.1), libqt5gui5 (>= 5.11.0~rc1) | libqt5gui5-gles (>= 5.11.0~rc1), libqt5network5 (>= 5.0.2), libqt5widgets5 (>= 5.15.1), libstdc++6 (>= 9), libtiff5 (>= 4.0.3), zlib1g (>= 1:1.1.4), python3 Recommends: python3-numpy Suggests: mrtrix3-doc, octave, matlab-support Conflicts: mrtrix Homepage: https://www.mrtrix.org Priority: optional Section: science Filename: pool/main/m/mrtrix3/mrtrix3_3.0.3-1~nd21.04+1_amd64.deb Size: 8344328 SHA256: db18ccf83c711fc01470a875da45b05e89b174a831daa3460c06d41a261179d3 SHA1: 81e9f0106ae361bebe90bf75332b8b8441784797 MD5sum: f600661ac593bfa251ecd3112efd6da7 Description: diffusion-weighted MRI white matter tractography Set of tools to perform diffusion-weighted MRI white matter tractography of the brain in the presence of crossing fibres, using Constrained Spherical Deconvolution, and a probabilisitic streamlines algorithm. Magnetic resonance images in DICOM, ANALYZE, or uncompressed NIfTI format are supported. Package: mrtrix3-doc Source: mrtrix3 Version: 3.0.3-1~nd21.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 87 Depends: neurodebian-popularity-contest Conflicts: mrtrix-doc Homepage: https://www.mrtrix.org Priority: optional Section: doc Filename: pool/main/m/mrtrix3/mrtrix3-doc_3.0.3-1~nd21.04+1_all.deb Size: 48732 SHA256: a19108b6d6987476634a93c6d3efdc09ee60b1b7ab1a54176a58a96281881ce4 SHA1: 6599915049b03010a0f10e39479fade9b7e3b98a MD5sum: 3730733211e660d428164a717f04dfef Description: documentation for mrtrix3 Set of tools to perform diffusion-weighted MRI white matter tractography of the brain in the presence of crossing fibres, using Constrained Spherical Deconvolution, and a probabilisitic streamlines algorithm. Magnetic resonance images in DICOM, ANALYZE, or uncompressed NIfTI format are supported. . This package provides the documentation in HTML format. Package: nuitka Version: 0.6.17.2+ds-1~nd21.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 10931 Depends: neurodebian-popularity-contest, gcc (>= 5.0) | g++ (>= 4.4) | clang (>= 3.0), scons (>= 2.0.0), python3-jinja2, python3-appdirs | base-files (<< 7.2), python3-dev, zlib1g-dev, ccache, python3:any (>= 3.3~) Recommends: python3-lxml, python3-tqdm, strace, chrpath, libfuse2 Homepage: https://nuitka.net Priority: optional Section: python Filename: pool/main/n/nuitka/nuitka_0.6.17.2+ds-1~nd21.04+1_all.deb Size: 1121704 SHA256: 0b45f5032f88801e075c4d823c5cc29173e9547fe424bceca61cc6ff325fbd14 SHA1: 1a049ecf86fd35dd118b9c0a064e61f03fc70517 MD5sum: 56f6353102de350e9c310d17037b4650 Description: Python compiler with full language support and CPython compatibility This Python compiler achieves full language compatibility and compiles Python code into compiled objects that are not second class at all. Instead they can be used in the same way as pure Python objects. Package: octave-psychtoolbox-3 Source: psychtoolbox-3 Version: 3.0.17.12.dfsg1-1~nd21.04+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 5912 Depends: neurodebian-popularity-contest, octave (>= 6.1.1~hg.2021.01.26), freeglut3 (>= 2.8.1), libasound2 (>= 1.0.16), libc6 (>= 2.29), libdc1394-25 (>= 2.2.6), libfreenect0.5 (>= 1:0.1.1), libgcc-s1 (>= 3.0), libgl1, libglib2.0-0 (>= 2.12.0), libglu1-mesa | libglu1, libgomp1 (>= 4.9), libgstreamer-plugins-base1.0-0 (>= 1.8~), libgstreamer1.0-0 (>= 1.4.0), libopenal1 (>= 1.14), libopenhmd0, libpciaccess0 (>= 0.10.7), libportaudio2 (>= 19+svn20101113), libstdc++6 (>= 9), libusb-1.0-0 (>= 2:1.0.9), libvulkan1 (>= 1.2.131.2), libx11-6 (>= 2:1.2.99.901), libx11-xcb1 (>= 2:1.7.0), libxcb-dri3-0, libxcb1, libxext6, libxfixes3 (>= 1:5.0), libxi6 (>= 2:1.2.99.4), libxrandr2 (>= 2:1.4.0), libxxf86vm1, psychtoolbox-3-common (= 3.0.17.12.dfsg1-1~nd21.04+1), psychtoolbox-3-lib (= 3.0.17.12.dfsg1-1~nd21.04+1) Recommends: octave-image, octave-optim, octave-signal, octave-statistics, octave-pkg-dev Provides: psychtoolbox, psychtoolbox-3 Homepage: http://psychtoolbox.org Priority: optional Section: science Filename: pool/main/p/psychtoolbox-3/octave-psychtoolbox-3_3.0.17.12.dfsg1-1~nd21.04+1_amd64.deb Size: 1100620 SHA256: 07394d24c78e65821399e888f17fdef7d649146fc05de28c24a35156957ced3c SHA1: a58bf924366541e29b84884aa9f10fcd8a830a8e MD5sum: cb6eeda2dd222edaecb98d62a13e963b Description: toolbox for vision research -- Octave bindings Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . See also http://www.psychtoolbox.org/UsingPsychtoolboxOnUbuntu for additional information about systems tune-up and initial configuration. . This package contains bindings for Octave. Package: psychtoolbox-3-common Source: psychtoolbox-3 Version: 3.0.17.12.dfsg1-1~nd21.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 647926 Depends: neurodebian-popularity-contest Recommends: alsa-utils, gamemode Suggests: gnuplot Homepage: http://psychtoolbox.org Priority: optional Section: science Filename: pool/main/p/psychtoolbox-3/psychtoolbox-3-common_3.0.17.12.dfsg1-1~nd21.04+1_all.deb Size: 26209748 SHA256: 49614d75dfbb5133f1fe39998438a1f4faf14d14da86129dd43ac9c088c46476 SHA1: f05a970bbc8a6fe4e79f833f1a3ee0cc1d37c6cf MD5sum: f0e02fd042cd9753a7ec7c4f118c6dcb Description: toolbox for vision research -- arch/interpreter independent part Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains architecture independent files (such as .m scripts) Package: psychtoolbox-3-dbg Source: psychtoolbox-3 Version: 3.0.17.12.dfsg1-1~nd21.04+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 251 Depends: neurodebian-popularity-contest, octave-psychtoolbox-3 (= 3.0.17.12.dfsg1-1~nd21.04+1) Homepage: http://psychtoolbox.org Priority: optional Section: debug Filename: pool/main/p/psychtoolbox-3/psychtoolbox-3-dbg_3.0.17.12.dfsg1-1~nd21.04+1_amd64.deb Size: 174432 SHA256: f724400aed81bcf1e2f1c52e6096bf5b08d43800b2ccfb6ba791e6410e513880 SHA1: a3863c22b800a662eee6c1c9809d6dc264a06146 MD5sum: 4fbe42b60ce3caafc9e1ec35b80272db Description: toolbox for vision research -- debug symbols for binaries Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . To ease debugging and troubleshooting this package contains debug symbols for Octave bindings and other binaries. Build-Ids: 1a29b4b2e799108859ca5d76f728039f08b9da47 7251d0e742215bcda3b7a5db45262508ba67a213 Package: psychtoolbox-3-lib Source: psychtoolbox-3 Version: 3.0.17.12.dfsg1-1~nd21.04+1 Architecture: amd64 Maintainer: NeuroDebian Maintainers Installed-Size: 208 Depends: neurodebian-popularity-contest, libc6 (>= 2.4), libfontconfig1 (>= 2.12.6), libfreetype6 (>= 2.2.1), libgcc-s1 (>= 3.0), libgl1, libglu1-mesa | libglu1, libstdc++6 (>= 5) Recommends: gstreamer1.0-plugins-base (>= 1.8~), gstreamer1.0-plugins-good, gstreamer1.0-plugins-bad, gstreamer1.0-plugins-ugly, gstreamer1.0-libav, libvulkan1 Homepage: http://psychtoolbox.org Priority: optional Section: science Filename: pool/main/p/psychtoolbox-3/psychtoolbox-3-lib_3.0.17.12.dfsg1-1~nd21.04+1_amd64.deb Size: 76688 SHA256: df734e30bb521df4c4a6a9e91680f61a62407792b900470b22c2c7f5cec096a8 SHA1: 022fb5ebaa27daff2393c566f363f21dbfb02f55 MD5sum: 4d2a240912897d7d5cf62eaca99f494e Description: toolbox for vision research -- arch-specific parts Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains additional binaries (tools/dynamic libraries) used by both Octave and Matlab frontends. Package: python3-datalad Source: datalad Version: 0.15.0-2~nd21.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 4178 Depends: neurodebian-popularity-contest, git-annex (>= 8.20200309~) | git-annex-standalone (>= 8.20200309~), patool, p7zip-full, python3 (>= 3.6), python3-annexremote, python3-appdirs, python3-distro, python3-distutils | libpython3-stdlib (<= 3.6.4~rc1-2), python3-fasteners (>= 0.14~), python3-gitlab, python3-humanize, python3 (>= 3.8) | python3-importlib-metadata, python3-iso8601, python3-keyring, python3-keyrings.alt | python3-keyring (<= 8), python3-mock, python3-msgpack, python3-pil, python3-requests (>= 1.2), python3-secretstorage, python3-simplejson, python3-six, python3-tqdm, python3-wrapt, python3-chardet, python3:any Recommends: python3-boto, python3-exif, python3-github, python3-html5lib, python3-httpretty, python3-jsmin, python3-libxmp, python3-lzma, python3-mutagen, python3-nose, python3-pyperclip, python3-requests-ftp, python3-vcr, python3-whoosh Suggests: python3-duecredit, datalad-container, datalad-crawler, datalad-neuroimaging, python3-bs4, python3-numpy Breaks: datalad-container (<< 1.1.2) Homepage: https://datalad.org Priority: optional Section: python Filename: pool/main/d/datalad/python3-datalad_0.15.0-2~nd21.04+1_all.deb Size: 877264 SHA256: 9715a6e0fcb70754f43333c3cbde531726f6d5194ebcebf1ce91cb51bafbc3f3 SHA1: 27ea482751e1ec7c69845c8f68cda274e62d0bc9 MD5sum: e86f8a867d902bfa7a73028316556c35 Description: data files management and distribution platform DataLad is a data management and distribution platform providing access to a wide range of data resources already available online. Using git-annex as its backend for data logistics it provides following facilities built-in or available through additional extensions . - command line and Python interfaces for manipulation of collections of datasets (install, uninstall, update, publish, save, etc.) and separate files/directories (add, get) - extract, aggregate, and search through various sources of metadata (xmp, EXIF, etc; install datalad-neuroimaging for DICOM, BIDS, NIfTI support) - crawl web sites to automatically prepare and update git-annex repositories with content from online websites, S3, etc (install datalad-crawler) . This package installs the module for Python 3, and Recommends install all dependencies necessary for searching and managing datasets, publishing, and testing. If you need base functionality, install without Recommends. Package: python3-pyfakefs Source: python-pyfakefs Version: 4.3.3-1+nd1~nd21.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 982 Depends: neurodebian-popularity-contest, python3:any Homepage: http://pyfakefs.org/ Priority: optional Section: python Filename: pool/main/p/python-pyfakefs/python3-pyfakefs_4.3.3-1+nd1~nd21.04+1_all.deb Size: 120884 SHA256: 0cb8496ca87a5d5de604f8c860e1764abc8e832db4230b4d9e637f4ae4126037 SHA1: d67172a07e2f09863659485c058d64e5726d0226 MD5sum: 80608dcd7483ad17ef5f2a6287d77459 Description: fake fs that mocks the Python file system modules - Python 3 pyfakefs implements a fake file system that mocks the Python file system modules. Using pyfakefs, your tests operate on a fake file system in memory without touching the real disk. The software under test requires no modification to work with pyfakefs. . This package contains the Python 3.x module. Package: python3-zipp Source: python-zipp Version: 1.0.0-3+nd1~nd21.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 25 Depends: neurodebian-popularity-contest, python3-more-itertools, python3:any Homepage: https://github.com/jaraco/zipp Priority: optional Section: python Filename: pool/main/p/python-zipp/python3-zipp_1.0.0-3+nd1~nd21.04+1_all.deb Size: 5668 SHA256: c2b398ee472a4b0df19e70dfbf2515783d4b9b5aab8a38437b9512bc44c2a760 SHA1: 85c0819ad137cf25d5b08ec0e3404c2813b52fd5 MD5sum: 9f168658e836565e2012c52a8f27821f Description: pathlib-compatible Zipfile object wrapper - Python 3.x A backport of the Path object to older versions of Python. It's pathlib-compatible interface for zip files using zipfile object inside. . This package contains Python 3.x module.