Package: bats Version: 1.8.0-1~nd22.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 150 Depends: neurodebian-popularity-contest Recommends: parallel Homepage: https://github.com/bats-core/bats-core Priority: optional Section: shells Filename: pool/main/b/bats/bats_1.8.0-1~nd22.04+1_all.deb Size: 40658 SHA256: f49040b8e9328cfbdcc4c5e1f4aa94c7f49d1002f1c0b8368acd02b6d9f59489 SHA1: d4b468d792358403cceed4d6d018444161f9e115 MD5sum: 3d49eb092b6d627b0581ad96396e1505 Description: bash automated testing system Bats is a TAP-compliant testing framework for Bash. It provides a simple way to verify that the UNIX programs you write behave as expected. Bats is most useful when testing software written in Bash, but you can use it to test any UNIX program. Package: btrbk Version: 0.32.4-1~nd22.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 401 Depends: neurodebian-popularity-contest, perl, btrfs-progs (>= 4.12) Recommends: openssh-client, mbuffer Suggests: openssl, python3 Homepage: https://digint.ch/btrbk/ Priority: optional Section: utils Filename: pool/main/b/btrbk/btrbk_0.32.4-1~nd22.04+1_all.deb Size: 112952 SHA256: aefe34e0a79871448735c0bfe97a760bb9a592a355c43476e899a4ba7de608bb SHA1: 8f95a2e6783aa08d8672d6292d4eb8fc5fb5a588 MD5sum: ac56fa3175fac7b786994332fdcbb75b Description: backup tool for btrfs subvolumes Backup tool for btrfs subvolumes, using a configuration file, allows creation of backups from multiple sources to multiple destinations, with ssh and flexible retention policy support (hourly, daily, weekly, monthly). Package: datalad Version: 0.17.6-3~nd22.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 225 Depends: neurodebian-popularity-contest, python3-datalad (= 0.17.6-3~nd22.04+1), python3-argcomplete (>= 1.12.3), python3:any Suggests: datalad-container, datalad-crawler, datalad-neuroimaging Homepage: https://datalad.org Priority: optional Section: science Filename: pool/main/d/datalad/datalad_0.17.6-3~nd22.04+1_all.deb Size: 186618 SHA256: daf2f174e1940e3c5861e589ccb4b2c6ae638666fed6a6f4f5af88c2d54250e9 SHA1: 3ee81872c2a2c69b4f719f36ac2e72452594d3c5 MD5sum: a1560a7ea99697b540ea1b1fcf309174 Description: data files management and distribution platform DataLad is a data management and distribution platform providing access to a wide range of data resources already available online. Using git-annex as its backend for data logistics it provides following facilities built-in or available through additional extensions . - command line and Python interfaces for manipulation of collections of datasets (install, uninstall, update, publish, save, etc.) and separate files/directories (add, get) - extract, aggregate, and search through various sources of metadata (xmp, EXIF, etc; install datalad-neuroimaging for DICOM, BIDS, NIfTI support) - crawl web sites to automatically prepare and update git-annex repositories with content from online websites, S3, etc (install datalad-crawler) Package: datalad-container Version: 1.1.7-1~nd22.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 113 Depends: neurodebian-popularity-contest, datalad (>= 0.13~), python3-requests (>= 1.2), python3-chardet (>= 3.0.4), python3-datalad, python3:any Recommends: singularity-container Suggests: docker.io Homepage: http://datalad-container.rtfd.org Priority: optional Section: science Filename: pool/main/d/datalad-container/datalad-container_1.1.7-1~nd22.04+1_all.deb Size: 24916 SHA256: 616bcbd1665302ec1f4d211696e606492a3f671660c9a5aff8990f7ac62a6d97 SHA1: f0872d81d02e0134d12928e32aee55523f1c0f3c MD5sum: 100c48778834d2b7f407c99be17bd7d3 Description: DataLad extension for working with containerized environments This extension enhances DataLad (http://datalad.org) for working with computational containers. Package: heudiconv Version: 0.11.4-1~nd22.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 13203 Depends: neurodebian-popularity-contest, python3-dcmstack, python3-filelock, python3-nibabel, python3-nipype, python3-pydicom, python3:any, dcm2niix, python3, python3-dicom, python3-numpy Recommends: python3-pytest, python3-datalad, python3-etelemetry Homepage: https://github.com/nipy/heudiconv Priority: optional Section: science Filename: pool/main/h/heudiconv/heudiconv_0.11.4-1~nd22.04+1_all.deb Size: 8283310 SHA256: 692ace7ab0573dfde72cbcc33c5c0dc91c61c6de80b52583ba5c6d2524f7bd65 SHA1: 2383c4fff8e8446813e5778ad2c0d973e8b764db MD5sum: 637decc3ccbe537fafb5df0001e1005c Description: DICOM converter with support for structure heuristics This is a flexible dicom converter for organizing brain imaging data into structured directory layouts. It allows for flexible directory layouts and naming schemes through customizable heuristics implementations. It only converts the necessary dicoms, not everything in a directory. It tracks the provenance of the conversion from dicom to nifti in w3c prov format. Package: libfreenect-doc Source: libfreenect Version: 1:0.5.3-3~nd22.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 907 Depends: neurodebian-popularity-contest Multi-Arch: foreign Homepage: http://openkinect.org/ Priority: extra Section: doc Filename: pool/main/libf/libfreenect/libfreenect-doc_0.5.3-3~nd22.04+1_all.deb Size: 147460 SHA256: 8fa7c86753eb7a20c36598b2176741093dc31fcab41817c1805937b3ec535ec3 SHA1: 613a68a7599d3d56df76334293bb087570c04758 MD5sum: ab0e4371e439e2ffb9c4e25447ec62c5 Description: library for accessing Kinect device -- documentation libfreenect is a cross-platform library that provides the necessary interfaces to activate, initialize, and communicate data with the Kinect hardware. Currently, the library supports access to RGB and depth video streams, motors, accelerometer and LED and provide binding in different languages (C++, Python...) . This library is the low level component of the OpenKinect project which is an open community of people interested in making use of the Xbox Kinect hardware with PCs and other devices. . This package contains the documentation of the API of libfreenect. Package: neurodebian Version: 0.41.1~nd22.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 93 Depends: python3, wget, neurodebian-archive-keyring, debconf (>= 0.5) | debconf-2.0 Recommends: netselect Suggests: neurodebian-desktop, neurodebian-popularity-contest Homepage: http://neuro.debian.net Priority: optional Section: science Filename: pool/main/n/neurodebian/neurodebian_0.41.1~nd22.04+1_all.deb Size: 35686 SHA256: afc2f82a39e70d789c49e6ddde7c0cdd26d9c95cc8e071d6f973879b513dccee SHA1: c8c557fa4600725b04fca7eb20fb4613d6b9d395 MD5sum: 4e175cacc9db40f848613c6bad570c33 Description: neuroscience-oriented distribution - repository configuration The NeuroDebian project integrates and maintains a variety of software projects within Debian that are useful for neuroscience (such as AFNI, FSL, PsychoPy, etc.) or generic computation (such as HTCondor, pandas, etc.). . This package enables the NeuroDebian repository on top of a standard Debian or Ubuntu system. Package: neurodebian-archive-keyring Source: neurodebian Version: 0.41.1~nd22.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 24 Depends: gnupg2 | gnupg, dirmngr Breaks: neurodebian-keyring (<< 0.34~) Replaces: neurodebian-keyring (<< 0.34~) Homepage: http://neuro.debian.net Priority: optional Section: science Filename: pool/main/n/neurodebian/neurodebian-archive-keyring_0.41.1~nd22.04+1_all.deb Size: 11666 SHA256: ab5c052b4ec0f657c783377cd62cdd355abccdf5d8b83c6698770a20294a4a0b SHA1: fd06fdb7173237dfb060b32b2a9ae7759a424b14 MD5sum: 3f5177f50d02768feb9d1519a18aa82a Description: neuroscience-oriented distribution - GnuPG archive keys The NeuroDebian project integrates and maintains a variety of software projects within Debian that are useful for neuroscience (such as AFNI, FSL, PsychoPy, etc.) or generic computation (such as HTCondor, pandas, etc.). . The NeuroDebian project digitally signs its Release files. This package contains the archive keys used for that. Package: neurodebian-desktop Source: neurodebian Version: 0.41.1~nd22.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 199 Depends: ssh-askpass-gnome | ssh-askpass, desktop-base, adwaita-icon-theme | gnome-icon-theme, neurodebian-popularity-contest Recommends: reportbug-ng Homepage: http://neuro.debian.net Priority: optional Section: science Filename: pool/main/n/neurodebian/neurodebian-desktop_0.41.1~nd22.04+1_all.deb Size: 125146 SHA256: 8065462819e8fae784fd6fd7c2d4b0606b076a6c27238001351e3cec575d4d1a SHA1: 4470fbf95088517bf7d75b8e16210efee9ac66bf MD5sum: a7e1b36d5fad8f9307dee0ce1997250c Description: neuroscience-oriented distribution - desktop integration The NeuroDebian project integrates and maintains a variety of software projects within Debian that are useful for neuroscience (such as AFNI, FSL, PsychoPy, etc.) or generic computation (such as HTCondor, pandas, etc.). . This package provides NeuroDebian artwork (icons, background image) and a NeuroDebian menu featuring the most popular neuroscience tools, which will be automatically installed upon initial invocation. Package: neurodebian-dev Source: neurodebian Version: 0.41.1~nd22.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 113 Depends: devscripts, neurodebian-archive-keyring Recommends: ubuntu-keyring, python3, zerofree, moreutils, time, debian-archive-keyring, apt-utils, cowbuilder, neurodebian-freeze Suggests: virtualbox-ose, virtualbox-ose-fuse, singularity-container Homepage: http://neuro.debian.net Priority: optional Section: science Filename: pool/main/n/neurodebian/neurodebian-dev_0.41.1~nd22.04+1_all.deb Size: 36446 SHA256: 3698575cc1a6f5e5b5d816354a3b9df862bdb1a0fe71ddfeb0faf28283014186 SHA1: ccd47728a7a3b3f2b4ac9ea5e88e250b5b3d4352 MD5sum: 26426d724b302ea8ca7b2bb957783060 Description: neuroscience-oriented distribution - development tools The NeuroDebian project integrates and maintains a variety of software projects within Debian that are useful for neuroscience (such as AFNI, FSL, PsychoPy, etc.) or generic computation (such as HTCondor, pandas, etc.). . This package provides sources and development tools used by NeuroDebian to provide backports for a range of Debian/Ubuntu releases. Package: neurodebian-freeze Source: neurodebian Version: 0.41.1~nd22.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 38 Homepage: http://neuro.debian.net Priority: optional Section: science Filename: pool/main/n/neurodebian/neurodebian-freeze_0.41.1~nd22.04+1_all.deb Size: 16186 SHA256: 20734275d28592a380a52c38a41801e667f4d95fd4c7f91feb9d05f764809241 SHA1: 54eb3ea5226772ea63507b0f51a388032e659be5 MD5sum: e0cfa34ad332a480255f82c0529af4d8 Description: nd_freeze tool to freeze APT sources to use snapshots The NeuroDebian project integrates and maintains a variety of software projects within Debian that are useful for neuroscience (such as AFNI, FSL, PsychoPy, etc.) or generic computation (such as HTCondor, pandas, etc.). . This minimalistic package provides nd_freeze script to be used in rich or minimalistic environments (such as Docker or Singularity recipes) to freeze their APT sources. Intended to assist making such images reproducible. Package: neurodebian-popularity-contest Source: neurodebian Version: 0.41.1~nd22.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 28 Depends: popularity-contest Homepage: http://neuro.debian.net Priority: optional Section: science Filename: pool/main/n/neurodebian/neurodebian-popularity-contest_0.41.1~nd22.04+1_all.deb Size: 13654 SHA256: 76b065f4093993f73dcea0123cd551bb9e2cd4399e77f3b35aa85d0998155cd6 SHA1: 81ab7b240c761f8d5a0e886603fc02cc8558520f MD5sum: bd9f645522c42b4721a2d23c938435e3 Description: neuroscience-oriented distribution - popcon integration The NeuroDebian project integrates and maintains a variety of software projects within Debian that are useful for neuroscience (such as AFNI, FSL, PsychoPy, etc.) or generic computation (such as HTCondor, pandas, etc.). . This package is a complement to the generic popularity-contest package to enable anonymous submission of usage statistics to NeuroDebian in addition to the popcon submissions to the underlying distribution (either Debian or Ubuntu) popcon server. . Participating in popcon is important for the following reasons: * Popular packages receive more attention from developers; bugs are fixed faster and updates are provided quicker. * It ensures that support is not dropped for a previous release of Debian or Ubuntu while there are active users. * User statistics may be useful for upstream research software developers seeking funding for continued development. . This requires that popcon is activated for the underlying distribution (Debian or Ubuntu), which can be achieved by running "dpkg-reconfigure popularity-contest" as root. Package: nuitka Version: 1.0.6+ds-1~nd22.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 11675 Depends: neurodebian-popularity-contest, gcc (>= 5.0) | g++ (>= 4.4) | clang (>= 3.0), scons (>= 2.0.0), python3-jinja2, python3-appdirs | base-files (<< 7.2), python3-dev, zlib1g-dev, libzstd-dev, ccache, patchelf, python3:any (>= 3.3~) Recommends: python3-lxml, python3-tqdm, strace, libfuse2 Homepage: https://nuitka.net Priority: optional Section: python Filename: pool/main/n/nuitka/nuitka_1.0.6+ds-1~nd22.04+1_all.deb Size: 1339556 SHA256: d13764c914685f1993f723b8fd69d77e7c94a1d86450ecf272135f776cdfb880 SHA1: e9b8332fa82101d5387a6576e24c2cd67b1a502c MD5sum: de1e18538faef2e5911c902fa1548f7f Description: Python compiler with full language support and CPython compatibility This Python compiler achieves full language compatibility and compiles Python code into compiled objects that are not second class at all. Instead they can be used in the same way as pure Python objects. Package: psychtoolbox-3-common Source: psychtoolbox-3 Version: 3.0.18.12.dfsg1-1~nd22.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 647983 Depends: neurodebian-popularity-contest Recommends: alsa-utils, gamemode Suggests: gnuplot Homepage: http://psychtoolbox.org Priority: optional Section: science Filename: pool/main/p/psychtoolbox-3/psychtoolbox-3-common_3.0.18.12.dfsg1-1~nd22.04+1_all.deb Size: 26697478 SHA256: 77e67bc627b486055a9dcd012580010651e6d799bcee052073a1e90c8337e01d SHA1: b063b20c1d9e5a58aa0e2a625d4100b26edc76bf MD5sum: 7c9e9bc509a19162d9094f949523a032 Description: toolbox for vision research -- arch/interpreter independent part Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains architecture independent files (such as .m scripts) Package: python3-datalad Source: datalad Version: 0.17.6-3~nd22.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 4668 Depends: neurodebian-popularity-contest, git-annex (>= 8.20200309~) | git-annex-standalone (>= 8.20200309~), patool, p7zip-full, python3 (>= 3.7), python3-annexremote, python3-distro, python3-distutils | libpython3-stdlib (<= 3.6.4~rc1-2), python3-fasteners (>= 0.14~), python3-gitlab, python3-humanize, python3 (>= 3.10) | python3-importlib-metadata (>= 3.6~), python3-iso8601, python3-keyring, python3-keyrings.alt | python3-keyring (<= 8), python3-mock, python3-msgpack, python3-pil, python3-appdirs, python3-requests (>= 1.2), python3-secretstorage, python3-simplejson, python3-six, python3-tqdm, python3-chardet, python3-packaging, python3:any Recommends: python3-boto, python3-exif, python3-html5lib, python3-httpretty, python3-jsmin, python3-libxmp, python3-lzma, python3-mutagen, python3-pytest, python3-pyperclip, python3-requests-ftp, python3-vcr, python3-whoosh Suggests: python3-duecredit, datalad-container, datalad-crawler, datalad-neuroimaging, python3-bs4, python3-numpy Breaks: datalad-container (<< 1.1.2) Homepage: https://datalad.org Priority: optional Section: python Filename: pool/main/d/datalad/python3-datalad_0.17.6-3~nd22.04+1_all.deb Size: 970134 SHA256: d5ab46ddaecf7c31a4010b70ac6393acc3b91b86af9f8c3a978bc5747d20c6f6 SHA1: 6459aa6a1096d3cf89bd34bbe1ef5468393a511f MD5sum: 8f1307fd35928691b655565d41c527b5 Description: data files management and distribution platform DataLad is a data management and distribution platform providing access to a wide range of data resources already available online. Using git-annex as its backend for data logistics it provides following facilities built-in or available through additional extensions . - command line and Python interfaces for manipulation of collections of datasets (install, uninstall, update, publish, save, etc.) and separate files/directories (add, get) - extract, aggregate, and search through various sources of metadata (xmp, EXIF, etc; install datalad-neuroimaging for DICOM, BIDS, NIfTI support) - crawl web sites to automatically prepare and update git-annex repositories with content from online websites, S3, etc (install datalad-crawler) . This package installs the module for Python 3, and Recommends install all dependencies necessary for searching and managing datasets, publishing, and testing. If you need base functionality, install without Recommends. Package: python3-dcmstack Source: dcmstack Version: 0.9-1~nd22.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 520 Depends: neurodebian-popularity-contest, python3-dicom, python3-nibabel, python3-numpy, python3-pydicom, python3:any, libjs-sphinxdoc (>= 4.3) Conflicts: python-dcmstack Homepage: https://github.com/moloney/dcmstack Priority: optional Section: science Filename: pool/main/d/dcmstack/python3-dcmstack_0.9-1~nd22.04+1_all.deb Size: 78034 SHA256: 3cfa9fb45e31d256f14e03ed10c09d3d9f5ed2f9fbe4182ed2e23ed2d22198f7 SHA1: 53c2998d4727296a915c121aee615d6c15468aac MD5sum: b18d166e11cd0a7b6896792e3a75bcad Description: DICOM to NIfTI conversion - python3 package DICOM to NIfTI conversion with the added ability to extract and summarize meta data from the source DICOMs. The meta data can be injected into a NIfTI header extension or written out as a JSON formatted text file. . This package provides the Python3 package. Package: python3-importlib-metadata Source: python-importlib-metadata Version: 4.6.4-1~nd3~nd22.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 67 Depends: neurodebian-popularity-contest, python3-typing-extensions | python3 (>> 3.8), python3-zipp (>= 0.5), python3:any Homepage: https://github.com/python/importlib_metadata Priority: optional Section: python Filename: pool/main/p/python-importlib-metadata/python3-importlib-metadata_4.6.4-1~nd3~nd22.04+1_all.deb Size: 16748 SHA256: 2b1ecbbb75906fd8fda8fffec3f4e282222d88d2ee13a14167fe8ff8b8194807 SHA1: e32ce67e8951579add9b34dfd2ecd089cd3cfb8e MD5sum: 9445e6790d4e9fa3f7865b2e467a1164 Description: library to access the metadata for a Python package - Python 3.x Provides an API for accessing an installed package’s metadata, such as its entry points or its top-level name. This functionality intends to replace most uses of pkg_resources entry point API and metadata API. . This package contains Python 3.x module. Package: python3-importlib-resources Source: importlib-resources Version: 5.1.0-1.1~nd22.04+1 Architecture: all Maintainer: NeuroDebian Maintainers Installed-Size: 97 Depends: neurodebian-popularity-contest, python3-zipp, python3:any Homepage: https://github.com/python/importlib_resources Priority: optional Section: python Filename: pool/main/i/importlib-resources/python3-importlib-resources_5.1.0-1.1~nd22.04+1_all.deb Size: 16100 SHA256: b9caa1ea2f7d995d4b797645f5a04370ca3203b101be394ac6aec386423f6bf5 SHA1: d3a8cc86a1fbc92188cbadb2428a30701cac1699 MD5sum: f51830b89063914d7238b824c25a16c3 Description: Read resources from Python packages importlib_resources is a backport of Python standard library importlib.resources module for older Pythons. Users of Python 3.9 and beyond should use the standard library module, since for these versions, importlib_resources just delegates to that module. . The key goal of this module is to replace parts of pkg_resources with a solution in Python's stdlib that relies on well-defined APIs. This makes reading resources included in packages easier, with more stable and consistent semantics. . This library provides two very simple decorators that document the publicness of the names in your module. They keep your module's __all__ in sync so you don't have to.