nipype.interfaces.slicer.segmentation.simpleregiongrowingsegmentation module¶
Autogenerated file - DO NOT EDIT If you spot a bug, please report it on the mailing list and/or change the generator.
SimpleRegionGrowingSegmentation¶
Bases: SEMLikeCommandLine
Wrapped executable:
SimpleRegionGrowingSegmentation.title: Simple Region Growing Segmentation
category: Segmentation
description: A simple region growing segmentation algorithm based on intensity statistics. To create a list of fiducials (Seeds) for this algorithm, click on the tool bar icon of an arrow pointing to a starburst fiducial to enter the ‘place a new object mode’ and then use the fiducials module. This module uses the Slicer Command Line Interface (CLI) and the ITK filters CurvatureFlowImageFilter and ConfidenceConnectedImageFilter.
version: 0.1.0.$Revision: 19904 $(alpha)
documentation-url: http://www.slicer.org/slicerWiki/index.php/Documentation/4.1/Modules/SimpleRegionGrowingSegmentation
contributor: Jim Miller (GE)
acknowledgements: This command module was derived from Insight/Examples (copyright) Insight Software Consortium
- args : a unicode string
- Additional parameters to the command. Maps to a command-line argument:
%s.- environ : a dictionary with keys which are a bytes or None or a value of class ‘str’ and with values which are a bytes or None or a value of class ‘str’
- Environment variables. (Nipype default value:
{})- inputVolume : a pathlike object or string representing an existing file
- Input volume to be filtered. Maps to a command-line argument:
%s(position: -2).- iterations : an integer (int or long)
- Number of iterations of region growing. Maps to a command-line argument:
--iterations %d.- labelvalue : an integer (int or long)
- The integer value (0-255) to use for the segmentation results. This will determine the color of the segmentation that will be generated by the Region growing algorithm. Maps to a command-line argument:
--labelvalue %d.- multiplier : a float
- Number of standard deviations to include in intensity model. Maps to a command-line argument:
--multiplier %f.- neighborhood : an integer (int or long)
- The radius of the neighborhood over which to calculate intensity model. Maps to a command-line argument:
--neighborhood %d.- outputVolume : a boolean or a pathlike object or string representing a file
- Output filtered. Maps to a command-line argument:
%s(position: -1).- seed : a list of items which are a list of from 3 to 3 items which are a float
- Seed point(s) for region growing. Maps to a command-line argument:
--seed %s....- smoothingIterations : an integer (int or long)
- Number of smoothing iterations. Maps to a command-line argument:
--smoothingIterations %d.- timestep : a float
- Timestep for curvature flow. Maps to a command-line argument:
--timestep %f.
- outputVolume : a pathlike object or string representing an existing file
- Output filtered.