nipype.interfaces.dtitk.base module

The dtitk module provides classes for interfacing with the DTITK command line tools.

These are the base tools for working with DTITK. Preprocessing tools are found in dtitk/preprocess.py Registration tools are found in dtitk/registration.py

Currently these tools are supported:

  • Rigid Tensor Registration
  • Affine Tensor Registration
  • Diffeomorphic Tensor Registration
  • Combine affiine and diffeomorphic transforms
  • Application of transform to tensor and scalar volumes
  • Threshold and Binarize
  • Adjusting the voxel space of tensor and scalar volumes
  • Resampling tensor and scalar volumes
  • Calculation of tensor metrics from tensor volume

Examples

See the docstrings of the individual classes for examples.

CommandLineDtitk

Link to code

Bases: CommandLine

args : a unicode string
Additional parameters to the command. Maps to a command-line argument: %s.
environ : a dictionary with keys which are a bytes or None or a value of class ‘str’ and with values which are a bytes or None or a value of class ‘str’
Environment variables. (Nipype default value: {})
class nipype.interfaces.dtitk.base.DTITKRenameMixin(*args, **kwargs)

Bases: object