nipype.interfaces.bru2nii module

The bru2nii module provides basic functions for dicom conversion

Bru2

Link to code

Bases: CommandLine

Wrapped executable: Bru2.

Uses bru2nii’s Bru2 to convert Bruker files

Examples

>>> from nipype.interfaces.bru2nii import Bru2
>>> converter = Bru2()
>>> converter.inputs.input_dir = "brukerdir"
>>> converter.cmdline  # doctest: +ELLIPSIS
'Bru2 -o .../data/brukerdir brukerdir'

input_dir : a pathlike object or string representing an existing directory

Input Directory. Maps to a command-line argument: %s (position: -1).

actual_size : a boolean

Keep actual size - otherwise x10 scale so animals match human. Maps to a command-line argument: -a.

append_protocol_name : a boolean

Append protocol name to output filename. Maps to a command-line argument: -p.

args : a unicode string

Additional parameters to the command. Maps to a command-line argument: %s.

compress : a boolean

Gz compress images (“.nii.gz”). Maps to a command-line argument: -z.

environ : a dictionary with keys which are a bytes or None or a value of class ‘str’ and with values which are a bytes or None or a value of class ‘str’

Environment variables. (Nipype default value: {})

force_conversion : a boolean

Force conversion of localizers images (multiple slice orientations). Maps to a command-line argument: -f.

output_filename : a unicode string

Output filename (“.nii” will be appended, or “.nii.gz” if the “-z” compress option is selected). Maps to a command-line argument: -o %s.

nii_file : a pathlike object or string representing an existing file